miRBase entry: pma-mir-146

Stem-loop pma-mir-146


Accession
MI0017081
Description
Petromyzon marinus pma-mir-146 precursor miRNA
Gene family
MIPF0000103; mir-146


Sequence

ccgggcggUGAGAACUGAAUUCCAUAGGCUgugacgacacugcagcAGCCUGGGUCUUCAGUUUUCUCCgucagg
((.(((((.((((((((((..((.((((((((..((....))..))))))))))..)))))))))).))))).))

Structure
  g     U          UU  A        ga  a 
cc ggcgg GAGAACUGAA  CC UAGGCUgu  cg c
|| ||||| ||||||||||  || ||||||||  ||  
gg cugCC CUUUUGACUU  GG GUCCGAcg  gu a
  a     U          CU  -        ac  c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature pma-miR-146-5p

Accession MIMAT0019478
Description Petromyzon marinus pma-miR-146-5p mature miRNA
Sequence 9 - UGAGAACUGAAUUCCAUAGGCU - 30
Evidence experimental
454 [1]

Mature pma-miR-146-3p

Accession MIMAT0019479
Description Petromyzon marinus pma-miR-146-3p mature miRNA
Sequence 47 - AGCCUGGGUCUUCAGUUUUCUCC - 69
Evidence experimental
454 [1]

References

  1. PubMed ID: 20959416
    microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
    "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
    "Proc Natl Acad Sci U S A (2010) 107:19379-19383