Stem-loop pma-mir-130a

Accession

MI0017065

Description

Petromyzon marinus pma-mir-130a precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

ucugugggccaaaGCCCUUUUUGUGUUGUACUACUguccgcuauggugcugagCAGUGCAAUAUUAAAAAGGGCAUuggcuggcag
.((((.((((((.(((((((((((((((((((.((...(((....)))...)).))))))))).)))))))))).)))))).))))

Structure

u    g      a          -         A  guc   u 
 cugu ggccaa GCCCUUUUUG UGUUGUACU CU   cgc a
 |||| |||||| |||||||||| ||||||||| ||   |||  
 gacg ucgguU CGGGAAAAAU AUAACGUGA ga   gug u
-    g      A          U         C  guc   g 

Annotation confidence Not enough data

Genome context

GL479242.1: 48513-48598 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-130a

Mature pma-miR-130a-5p

• Accession: MIMAT0019454
• Description: Petromyzon marinus pma-miR-130a-5p mature miRNA
• Sequence: 14 - GCCCUUUUUGUGUUGUACUACU - 35
• Evidence: experimental ; 454 [1]

Mature pma-miR-130a-3p

• Accession: MIMAT0019455
• Description: Petromyzon marinus pma-miR-130a-3p mature miRNA
• Sequence: 54 - CAGUGCAAUAUUAAAAAGGGCAU - 76
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383