Stem-loop pma-mir-30f-1

Accession

MI0017044

Description

Petromyzon marinus pma-mir-30f-1 precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

cucagucaaUGUAAACACCCUACACUCUCAGCugugcgccauugguuagcugggagugggguguuuauguugacugcc
..((((((((((((((((((..((((((((((((...(((...)))))))))))))))))))))))))))))))))..

Structure

cu                  UA            ugc   a 
  cagucaaUGUAAACACCC  CACUCUCAGCug   gcc  
  ||||||||||||||||||  ||||||||||||   ||| u
  gucaguuguauuuguggg  gugagggucgau   ugg  
cc                  --            ---   u 

Annotation confidence Not enough data

Genome context

GL476506.1: 125114-125191 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-30f-1

Mature pma-miR-30f

• Accession: MIMAT0019430
• Description: Petromyzon marinus pma-miR-30f mature miRNA
• Sequence: 10 - UGUAAACACCCUACACUCUCAGC - 32
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383