Stem-loop pma-mir-29a

Accession

MI0017035

Description

Petromyzon marinus pma-mir-29a precursor miRNA

Gene family

MIPF0000009; mir-29

Sequence

acccagaugACUGAUUUCUCUUGGUGUUUAGAguuccguaugccuggucUAGCACCAUUUGAAAUCAGUUAuguggagagggu
..(((.((((((((((((...(((((((.(((...(((......)))))))))))))...)))))))))))).))).......

Structure

-----ac   g            UCU       U   guu   ua 
       cca augACUGAUUUC   UGGUGUU AGA   ccg  u
       ||| ||||||||||||   ||||||| |||   |||   
       ggu uAUUGACUAAAG   ACCACGA Ucu   ggu  g
ugggaga   g            UUU       -   ---   cc 

Annotation confidence Not enough data

Genome context

GL477440.1: 3408-3490 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-29a

Mature pma-miR-29a-5p

• Accession: MIMAT0019416
• Description: Petromyzon marinus pma-miR-29a-5p mature miRNA
• Sequence: 10 - ACUGAUUUCUCUUGGUGUUUAGA - 32
• Evidence: experimental ; 454 [1]

Mature pma-miR-29a-3p

• Accession: MIMAT0019417
• Description: Petromyzon marinus pma-miR-29a-3p mature miRNA
• Sequence: 50 - UAGCACCAUUUGAAAUCAGUUA - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383