Stem-loop pma-mir-25b

Accession

MI0017029

Description

Petromyzon marinus pma-mir-25b precursor miRNA

Gene family

MIPF0000013; mir-25

Sequence

gucuggacggcgcgagcaGGCGGAGACUGGAGCAAGUGCUCuaccacucgugguggCAUUGCACUAGUCUCAGUCUGCccgagucgccgccc
....((.(((((((.((((((.((((((((.((((.((((((((.....)))).)))))))).)))))))).)))))).))...))))))).

Structure

gucu  a     ---  a      G        A    G    -    c 
    gg cggcg   cg gcaGGC GAGACUGG GCAA UGCU Cuac a
    || |||||   || |||||| |||||||| |||| |||| |||| c
    cc gccgc   gc CGUCUG CUCUGAUC CGUU ACgg ggug u
---c  -     uga  c      A        A    -    u    c 

Annotation confidence Not enough data

Genome context

GL478379.1: 408922-409013 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from pma-mir-25b

Mature pma-miR-25b-5p

• Accession: MIMAT0019406
• Description: Petromyzon marinus pma-miR-25b-5p mature miRNA
• Sequence: 19 - GGCGGAGACUGGAGCAAGUGCUC - 41
• Evidence: experimental ; 454 [1]

Mature pma-miR-25b-3p

• Accession: MIMAT0019407
• Description: Petromyzon marinus pma-miR-25b-3p mature miRNA
• Sequence: 57 - CAUUGCACUAGUCUCAGUCUGC - 78
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383