miRBase entry: bcy-MIR396b

Stem-loop bcy-MIR396b


Accession
MI0016988
Description
Bruguiera cylindrica bcy-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396


Sequence

augcuaUUCCACAGCUUUCUUGAACUUucuugaacugcuuuuuauaauuuuuguauauagcaccauacauggaagcucaagaaagcugugggaaaacau
......(((((((((((((((((.(((((.((...((((...(((((...)))))...)))).....)).))))).)))))))))))))))))......

Structure
augcua                 A     u  --aac    uuu     u 
      UUCCACAGCUUUCUUGA CUUuc ug     ugcu   uauaa  
      ||||||||||||||||| ||||| ||     ||||   ||||| u
      agggugucgaaagaacu gaagg ac     acga   auguu  
uacaaa                 c     u  auacc    uau     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bcy-miR396b

Accession MIMAT0020966
Description Bruguiera cylindrica bcy-miR396b mature miRNA
Sequence 7 - UUCCACAGCUUUCUUGAACUU - 27
Evidence experimental
Northern [1], RTPCR [1]

References

  1. Identification of microRNA precursors in Bruguiera spp.
    "Lee WS, Li LP, Ling HC, Harikrishna JA"
    Botanica Marina. (2011) 54:313-324