Stem-loop bgy-MIR396a

Accession

MI0016983

Description

Bruguiera gymnorhiza bgy-MIR396a precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

1 open access papers mention bgy-MIR396a
(8 sentences)

Sequence

cccucuuuguauucUUCCACAGCUUUCUUGAACUGcaucucuuagauuuguuuuugcaugccacgguuucuggcuggacgacuuguggauuugcgguucaauaaagcugugggaagauacagacaggg
((((.((((((((.((((((((((((.((((((((((..(((..((.(((((....((.((((.......))))))))))).))..)))..)))))))))).)))))))))))).)))))))).))))

Structure

    c        c            C          uc   ua  u     uuug  u    cg 
cccu uuuguauu UUCCACAGCUUU UUGAACUGca  ucu  ga uuguu    ca gcca  g
|||| |||||||| |||||||||||| ||||||||||  |||  || |||||    || ||||  u
ggga agacauag agggugucgaaa aacuuggcgu  agg  uu agcag    gu cggu  u
    c        a            u          uu   ug  c     ----  -    cu 

Annotation confidence Not enough data

Genome context

Unknown

Mature bgy-miR396a

• Accession: MIMAT0020961
• Description: Bruguiera gymnorhiza bgy-miR396a mature miRNA
• Sequence: 15 - UUCCACAGCUUUCUUGAACUG - 35
• Evidence: experimental ; Northern [1], RTPCR [1]

References

1. Identification of microRNA precursors in Bruguiera spp.
   "Lee WS, Li LP, Ling HC, Harikrishna JA"
   Botanica Marina. (2011) 54:313-324