Stem-loop sequence mmu-mir-3970

Accession

MI0016980 (change log)

Symbol

MGI:Mir3970

Description

Mus musculus miR-3970 stem-loop

Stem-loop

   cuag    uu    ---u   -a    g      c   cuu   ga a 
5'     gaau  gagg    ugu  guuu ugcuuu uau   gua  g u
       ||||  ||||    |||  |||| |||||| |||   |||  |  
3'     uuug  uucc    acg  caaa acgaag aug   cau  c u
   ----    uu    cacu   ac    g      u   acu   aa u 

Deep sequencing

5833158 reads, 1.49e+04 reads per million, 107 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr19: 33157112-33157201 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000082781 ; Rnls-001; intron 6

  ENSMUST00000163093 ; Rnls-201; intron 4

  ENSMUST00000096114 ; Rnls-001; intron 6

Database links

• EntrezGene:Mir3970
• MGI:Mir3970
• RNAcentral:URS000075A4EE_10090
• miRBase Tracker:MI0016980

Mature sequence mmu-miR-3970

• Accession: MIMAT0019355
• Sequence: 11 - gagguuguaguuugugcuuu - 30
• Deep sequencing: 5833155 reads, 107 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000280427_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-3970
  • miRDB:mmu-miR-3970

References

1. PMID:20935160 "Next-generation sequencing identifies the natural killer cell microRNA transcriptome" Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER Genome Res. 20:1590-1604(2010).