Stem-loop sequence mmu-mir-1843b

Accession

MI0016971 (change log)

Symbol

MGI:Mir1843b

Description

Mus musculus miR-1843b stem-loop

Gene family

MIPF0001119; mir-1843

Literature search

2 open access papers mention mmu-mir-1843b
(8 sentences)

Stem-loop

   --caac       -ucu u   u       gau 
5'       auggagg    c guc gacuuag   a
         |||||||    | ||| |||||||   g
3'       uaccucc    g uag cugaauc   c
   ccaaca       ccuu c   c       ggu 

Deep sequencing

97114 reads, 16.7 reads per million, 102 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr1: 159340358-159340423 [+]
• Overlapping transcripts:

  sense

  ENSMUST00000158911 ; Scarna3a-201; exon 1

  ENSMUST00000076894 ; Rfwd2-201; intron 18

Database links

• EntrezGene:Mir1843b
• MGI:Mir1843b
• RNAcentral:URS000075E3D7_10090
• miRBase Tracker:MI0016971

Mature sequence mmu-miR-1843b-5p

• Accession: MIMAT0019345
• Sequence: 5 - auggaggucucugucugacuu - 25
• Deep sequencing: 87219 reads, 102 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00001A755A_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1843b-5p
  • miRDB:mmu-miR-1843b-5p

Mature sequence mmu-miR-1843b-3p

• Accession: MIMAT0019346
• Sequence: 43 - ccgaucguuccccuccauac - 62
• Deep sequencing: 9845 reads, 91 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000003A7A4_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-1843b-3p
  • miRDB:mmu-miR-1843b-3p

References

1. PMID:20935160 "Next-generation sequencing identifies the natural killer cell microRNA transcriptome" Fehniger TA, Wylie T, Germino E, Leong JW, Magrini VJ, Koul S, Keppel CR, Schneider SE, Koboldt DC, Sullivan RP, Heinz ME, Crosby SD, Nagarajan R, Ramsingh G, Link DC, Ley TJ, Mardis ER Genome Res. 20:1590-1604(2010).