Stem-loop sequence mmu-mir-3960

Accession

MI0016963 (change log)

Symbol

MGI:Mir3960

Description

Mus musculus miR-3960 stem-loop

Gene family

MIPF0001271; mir-3960

Literature search

8 open access papers mention mmu-mir-3960
(10 sentences)

Stem-loop

        g      ugc   c   a   gg       ac 
5' gccac gcuucc   gcc ccg ucg  gccgcca  a
   ||||| ||||||   ||| ||| |||  |||||||  g
3' cggug cggggg   cgg ggc ggc  cggcggu  c
        a      ---   a   -   gg       cg 

Deep sequencing

256 reads, 0 reads per million, 48 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 32712900-32712972 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000075916 ; Cdk9-006; 5'UTR (exon 1)

  ENSMUST00000123170 ; Cdk9-006; 5'UTR (exon 1)

Clustered miRNAs

< 10kb from mmu-mir-3960

• mmu-mir-3960: chr2: 32712900-32712972 [-]
• mmu-mir-2861: chr2: 32712807-32712888 [-]

Database links

• EntrezGene:Mir3960
• MGI:Mir3960
• miRBase Tracker:MI0016963

Mature sequence mmu-miR-3960

• Accession: MIMAT0019336
• Sequence: 47 - ggcggcggcggaggcggggg - 66
• Deep sequencing: 183 reads, 44 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-3960
  • miRDB:mmu-miR-3960

References

1. PMID:21324897 "A Runx2/miR-3960/miR-2861 regulatory feedback loop during mouse osteoblast differentiation" Hu R, Liu W, Li H, Yang L, Chen C, Xia ZY, Guo LJ, Xie H, Zhou HD, Wu XP, Luo XH J Biol Chem. 286:12328-12339(2011).