miRBase entry: oar-mir-323c

Stem-loop oar-mir-323c


Accession
MI0016962
Description
Ovis aries oar-mir-323c precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
2 open access papers mention oar-mir-323c
(2 sentences)

Sequence

213 reads, 53 reads per million, 13 experiments
gcgugcugcugcacuugaugcuugaggagagguugcccguggccgguucgcauucuucaugucgCACAAUACACGGUCGGCCUCUcuucgguaucaaaucccaccuugca
..((((....))))((((((((.((((((((((((.(((((....((.(((((.....))).)).))....))))).)))))))))))))))))))).............

Structure
gcgugcugcugcac        u            c     gccg  u  -   u 
              uugaugcu gaggagagguug ccgug    gu cg cau c
              |||||||| |||||||||||| |||||    || || ||| u
              aacuaugg cuucUCUCCGGC GGCAC    CA gc gua u
-acguuccacccua        -            U     AUAA  C  u   c 


Annotation confidence Not enough data
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Genome context
chr18: 64563301-64563410 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from oar-mir-323c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-323c

Accession MIMAT0019335
Description Ovis aries oar-miR-323c mature miRNA
Sequence 65 - CACAAUACACGGUCGGCCUCU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662