Stem-loop sequence oar-mir-410

AccessionMI0016961 (change log)
DescriptionOvis aries miR-410 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
   caccugcggucuguggaguaggcgccacuuug      u     g    ug      a  a     - uuu 
5'                                 gguacu gagga aggu  ucugug ug guucg c   a
                                   |||||| ||||| ||||  |||||| || ||||| |   u
3'                                 ccauga cuuuu uccg  agacac au uaagc g   u
   -----------------cgugcuccccaccca      -     g    gu      a  a     a uaa
Get sequence
Deep sequencing
447 reads, 76.9 reads per million, 13 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64562773-64562898 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-410
oar-mir-485chr18: 64552826-64552936 [+]
oar-mir-323bchr18: 64553587-64553696 [+]
oar-mir-154achr18: 64556923-64557027 [+]
oar-mir-154bchr18: 64557232-64557340 [+]
oar-mir-496chr18: 64557719-64557837 [+]
oar-mir-377chr18: 64559316-64559445 [+]
oar-mir-541chr18: 64561254-64561367 [+]
oar-mir-3957chr18: 64561647-64561751 [+]
oar-mir-409chr18: 64562168-64562268 [+]
oar-mir-412chr18: 64562295-64562418 [+]
oar-mir-369chr18: 64562459-64562565 [+]
oar-mir-410chr18: 64562773-64562898 [+]
oar-mir-323cchr18: 64563301-64563410 [+]
Database links

Mature sequence oar-miR-410-5p

Accession MIMAT0019333
Sequence

23 -  

cgccacuuuggguacuugaggag

 - 45

Get sequence
Deep sequencing7 reads, 6 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-410-3p

Accession MIMAT0019334
Sequence

81 -  

aauauaacacagauggccugu

 - 101

Get sequence
Deep sequencing434 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).