Stem-loop oar-mir-3957

Accession

MI0016957

Description

Ovis aries oar-mir-3957 precursor miRNA

Gene family

MIPF0001605; mir-3957

Literature search

1 open access papers mention oar-mir-3957
(10 sentences)

Sequence

841 reads, 198 reads per million, 13 experiments

ccagaggcaguguuggugggagCUCGGAGAGUGGAGCUGUGGGUGUcagggucaggcacACGCACAGCACCUCACUGAGCUccuuccaaaggcaacgucuuccaa
...(((((..((((((.((((((((((.(((.(..((((((.(((((........).)))).)))))).)))).)))))))))).)))...)))..)))))....

Structure

-cca     ag   ---   u          A   U GA      G    - agg 
    gaggc  ugu   ugg gggagCUCGG GAG G  GCUGUG GUGU c   g
    |||||  |||   ||| |||||||||| ||| |  |||||| |||| |    
    uucug  acg   acc uccUCGAGUC CUC C  CGACAC CAca g   u
aacc     ca   gaa   u          A   - -A      G    c gac 

Annotation confidence Not enough data

Genome context

chr18: 64561647-64561751 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from oar-mir-3957

Mature oar-miR-3957-5p

• Accession: MIMAT0019325
• Description: Ovis aries oar-miR-3957-5p mature miRNA
• Sequence: 23 - CUCGGAGAGUGGAGCUGUGGGUGU - 46
• Evidence: experimental ; Illumina [1]

Mature oar-miR-3957-3p

• Accession: MIMAT0019326
• Description: Ovis aries oar-miR-3957-3p mature miRNA
• Sequence: 60 - ACGCACAGCACCUCACUGAGCU - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662