Stem-loop sequence oar-mir-382

AccessionMI0016947 (change log)
DescriptionOvis aries miR-382 stem-loop
Gene family MIPF0000018; mir-154
Literature search

3 open access papers mention oar-mir-382
(3 sentences)

Stem-loop 
   cccugcucugucuugccucugccuuucug       u       -a           ug      - uuu 
5'                              ugguacu gaagaga  guuguucgugg  gauucg c   a
                                ||||||| |||||||  |||||||||||  |||||| |   c
3'                              accauga cuuuuuu  caacaggcacu  cuaagc g   u
   --------------gaaucuccaucauaa       -       ca           ua      a uau
Get sequence
Deep sequencing
3023 reads, 531 reads per million, 13 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Oar_v4.0; GCA_000298735.2) Overlapping transcripts
chr18: 64551749-64551874 [+]
intergenic
Clustered miRNAs
< 10kb from oar-mir-382
oar-mir-381chr18: 64542580-64542707 [+]
oar-mir-487bchr18: 64543093-64543199 [+]
oar-mir-539chr18: 64543862-64543971 [+]
oar-mir-544chr18: 64545480-64545580 [+]
oar-mir-655chr18: 64546384-64546490 [+]
oar-mir-3959chr18: 64548402-64548502 [+]
oar-mir-487achr18: 64548818-64548920 [+]
oar-mir-382chr18: 64551749-64551874 [+]
oar-mir-134chr18: 64552132-64552238 [+]
oar-mir-668chr18: 64552683-64552787 [+]
oar-mir-485chr18: 64552826-64552936 [+]
oar-mir-323bchr18: 64553587-64553696 [+]
oar-mir-154achr18: 64556923-64557027 [+]
oar-mir-154bchr18: 64557232-64557340 [+]
oar-mir-496chr18: 64557719-64557837 [+]
oar-mir-377chr18: 64559316-64559445 [+]
oar-mir-541chr18: 64561254-64561367 [+]
oar-mir-3957chr18: 64561647-64561751 [+]
Database links

Mature sequence oar-miR-382-5p

Accession MIMAT0019306
Sequence

43 -  

gaaguuguucgugguggauucg

 - 64

Get sequence
Deep sequencing2180 reads, 13 experiments
Evidence experimental; Illumina [1]

Mature sequence oar-miR-382-3p

Accession MIMAT0019307
Sequence

79 -  

aaucauucacggacaacacuu

 - 99

Get sequence
Deep sequencing840 reads, 13 experiments
Evidence experimental; Illumina [1]

References

1
PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).