miRBase entry: oar-mir-376c

Stem-loop oar-mir-376c


Accession
MI0016933
Description
Ovis aries oar-mir-376c precursor miRNA
Gene family
MIPF0000091; mir-368

Literature search
2 open access papers mention oar-mir-376c
(2 sentences)

Sequence

22994 reads, 4987 reads per million, 13 experiments
auccuucuuugguauuuaaaagGUGGAUAUUCCGUCUAUGUUUauguuauuuaugguuaAACAUAGAGGAAAUUCCACGUuuucaguaucaaaugcugcuuggaa
.......(((((((((.((((.(((((..((((.((((((((((.............))))))))))))))..))))).)))).)))))))))............

Structure
-----auccuuc         u    g     UA    G          uguua 
            uuugguauu aaaa GUGGA  UUCC UCUAUGUUUa     u
            ||||||||| |||| |||||  |||| ||||||||||     u
            aaacuauga uuuU CACCU  AAGG AGAUACAAau     u
aagguucgucgu         c    G     UA    -          uggua 


Annotation confidence High
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Genome context
chr18: 64537853-64537957 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from oar-mir-376c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-376c-5p

Accession MIMAT0019279
Description Ovis aries oar-miR-376c-5p mature miRNA
Sequence 23 - GUGGAUAUUCCGUCUAUGUUU - 43
Evidence experimental
Illumina [1]

Mature oar-miR-376c-3p

Accession MIMAT0019280
Description Ovis aries oar-miR-376c-3p mature miRNA
Sequence 60 - AACAUAGAGGAAAUUCCACGU - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662