Stem-loop sequence oar-mir-376c

Accession

MI0016933 (change log)

Description

Ovis aries miR-376c stem-loop

Gene family

MIPF0000091; mir-368

Literature search

2 open access papers mention oar-mir-376c
(2 sentences)

Stem-loop

   a   -----uuc         u    g     ua    g          uguua 
5'  ucc        uuugguauu aaaa gugga  uucc ucuauguuua     u
    |||        ||||||||| |||| |||||  |||| ||||||||||     u
3'  agg        aaacuauga uuuu caccu  aagg agauacaaau     u
   a   uucgucgu         c    g     ua    -          uggua 

Deep sequencing

42860 reads, 7.85e+03 reads per million, 13 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64537853-64537957 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from oar-mir-376c

• oar-mir-494: chr18: 64529077-64529173 [+]
• oar-mir-1193: chr18: 64529620-64529722 [+]
• oar-mir-543: chr18: 64531404-64531526 [+]
• oar-mir-495: chr18: 64532840-64532965 [+]
• oar-mir-3958: chr18: 64534803-64534906 [+]
• oar-mir-376e: chr18: 64537482-64537587 [+]
• oar-mir-376c: chr18: 64537853-64537957 [+]
• oar-mir-376d: chr18: 64538218-64538327 [+]
• oar-mir-654: chr18: 64538374-64538478 [+]
• oar-mir-376b: chr18: 64538600-64538705 [+]
• oar-mir-376a: chr18: 64538968-64539070 [+]
• oar-mir-1185: chr18: 64540919-64541024 [+]
• oar-mir-3956: chr18: 64541653-64541781 [+]
• oar-mir-381: chr18: 64542580-64542707 [+]
• oar-mir-487b: chr18: 64543093-64543199 [+]
• oar-mir-539: chr18: 64543862-64543971 [+]
• oar-mir-544: chr18: 64545480-64545580 [+]
• oar-mir-655: chr18: 64546384-64546490 [+]

Database links

• miRBase Tracker:MI0016933

Mature sequence oar-miR-376c-5p

• Accession: MIMAT0019279
• Sequence: 23 - guggauauuccgucuauguuu - 43
• Deep sequencing: 2248 reads, 13 experiments
• Evidence: experimental; Illumina [1]

Mature sequence oar-miR-376c-3p

• Accession: MIMAT0019280
• Sequence: 60 - aacauagaggaaauuccacgu - 80
• Deep sequencing: 40610 reads, 13 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:20944086 "Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing" Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D Genome Res. 20:1651-1662(2010).