miRBase entry: oar-mir-3958

Stem-loop oar-mir-3958


Accession
MI0016931
Description
Ovis aries oar-mir-3958 precursor miRNA
Gene family
MIPF0000018; mir-154

Literature search
1 open access papers mention oar-mir-3958
(1 sentences)

Sequence

2472 reads, 649 reads per million, 13 experiments
cuggucugagauguucgaaaggAGGUUGUCCGUGAUGUAUUUGCuuuauuuguggcAGAUAUUGCACGGUUGAUCUCUuuucuucaucaaaugccuucuugaag
..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).))).........

Structure
-------cu   c ga    uuc           GU     AU         uua 
         ggu u  gaug   gaaaggAGGUU  CCGUG  GUAUUUGCu   u
         ||| |  ||||   |||||||||||  |||||  |||||||||    
         ccg a  cuac   cuuuUCUCUAG  GGCAC  UAUAGAcgg   u
gaaguucuu   u aa    -uu           UU     GU         ugu 


Annotation confidence Not enough data
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Genome context
chr18: 64534803-64534906 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from oar-mir-3958
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-3958-5p

Accession MIMAT0019275
Description Ovis aries oar-miR-3958-5p mature miRNA
Sequence 23 - AGGUUGUCCGUGAUGUAUUUGC - 44
Evidence experimental
Illumina [1]

Mature oar-miR-3958-3p

Accession MIMAT0019276
Description Ovis aries oar-miR-3958-3p mature miRNA
Sequence 57 - AGAUAUUGCACGGUUGAUCUCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662