miRBase entry: oar-mir-380

Stem-loop oar-mir-380


Accession
MI0016920
Description
Ovis aries oar-mir-380 precursor miRNA
Gene family
MIPF0000126; mir-379


Sequence

3434 reads, 718 reads per million, 13 experiments
ccuucccacgguaccugaaaagAUGGUUGACCACAGAACAUGCGcugucucuaugucgUAUGUAAUGUGGUCCACGUCUucucaauaucaaauucagucgcag
.........((((..(((.((((((...(((((((..((((((((.........).)))))))..)))))))..)))))).))).))))..............

Structure
-----ccuucccac    cc   a      GUU       GA       - ugu 
              ggua  uga aagAUG   GACCACA  ACAUGCG c   c
              ||||  ||| ||||||   |||||||  ||||||| |   u
              cuau  acu uUCUGC   CUGGUGU  UGUAUgc g   c
gacgcugacuuaaa    -a   c      -AC       AA       u uau 


Annotation confidence High
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Genome context
chr18: 64524198-64524300 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from oar-mir-380
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-380-5p

Accession MIMAT0019253
Description Ovis aries oar-miR-380-5p mature miRNA
Sequence 23 - AUGGUUGACCACAGAACAUGCG - 44
Evidence experimental
Illumina [1]

Mature oar-miR-380-3p

Accession MIMAT0019254
Description Ovis aries oar-miR-380-3p mature miRNA
Sequence 59 - UAUGUAAUGUGGUCCACGUCU - 79
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662