miRBase entry: oar-mir-433

Stem-loop oar-mir-433


Accession
MI0016914
Description
Ovis aries oar-mir-433 precursor miRNA
Gene family
MIPF0000177; mir-433

Literature search
7 open access papers mention oar-mir-433
(15 sentences)

Sequence

580 reads, 93 reads per million, 13 experiments
acccaguggccggggagaagUACGGUGAGCCUGUCAUUGUUCAgagaggcuagauccuccuuguugagaaggAUCAUGAUGGGCUCCUCGGUGUucuccagguagcggcaccac
..((.((.(((..((((((...(((.(((((((((((...............((((((.(((...))).))))))))))))))))).)))...)))))).))).))))......

Structure
----ac  a  g   gg      gUA   U           UGUUCAgagaggcua      c   g 
      cc gu gcc  ggagaa   CGG GAGCCUGUCAU               gauccu cuu  
      || || |||  ||||||   ||| |||||||||||               |||||| ||| u
      gg cg ugg  ccucuU   GCU CUCGGGUAGUA               CUAgga gag  
caccac  -  a   -a      GUG   C           ---------------      a   u 


Annotation confidence Not enough data
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Genome context
chr18: 64384195-64384308 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from oar-mir-433
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oar-miR-433-5p

Accession MIMAT0019241
Description Ovis aries oar-miR-433-5p mature miRNA
Sequence 21 - UACGGUGAGCCUGUCAUUGUUCA - 43
Evidence experimental
Illumina [1]

Mature oar-miR-433-3p

Accession MIMAT0019242
Description Ovis aries oar-miR-433-3p mature miRNA
Sequence 73 - AUCAUGAUGGGCUCCUCGGUGU - 94
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20944086
    Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
    "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
    "Genome Res (2010) 20:1651-1662