Stem-loop sequence hsa-mir-4516

Accession

MI0016882 (change log)

Symbol

HGNC:MIR4516

Description

Homo sapiens miR-4516 stem-loop

Literature search

9 open access papers mention hsa-mir-4516
(73 sentences)

Stem-loop

   a      --a   u      -ag  ag   agg         gg 
5'  gggaga   ggg cggggc   gg  ggc   gcaggcucu  g
    ||||||   ||| ||||||   ||  |||   |||||||||  g
3'  cccucu   ccc gucucg   cc  cug   ugucugggg  u
   c      gca   -      gca  ga   -ag         gg 

Deep sequencing

5630 reads, 229 reads per million, 124 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr16: 2133119-2133204 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000434574 ; TSC2-016; exon 1

  OTTHUMT00000434575 ; TSC2-019; 3'UTR (exon 1)

  OTTHUMT00000319843 ; TSC2-005; intron 5

  OTTHUMT00000250658 ; TSC2-002; intron 28

  OTTHUMT00000319845 ; TSC2-007; intron 29

  OTTHUMT00000434564 ; TSC2-017; intron 29

  OTTHUMT00000319841 ; TSC2-003; intron 30

  OTTHUMT00000319844 ; TSC2-006; intron 30

  OTTHUMT00000319842 ; TSC2-004; intron 31

  OTTHUMT00000250657 ; TSC2-001; intron 32

  ENST00000569930 ; TSC2-016; exon 1

  ENST00000569110 ; TSC2-019; 3'UTR (exon 1)

  ENST00000497886 ; TSC2-005; intron 5

  ENST00000439117 ; TSC2-002; intron 28

  ENST00000382538 ; TSC2-007; intron 29

  ENST00000439673 ; TSC2-017; intron 29

  ENST00000401874 ; TSC2-003; intron 30

  ENST00000568454 ; TSC2-006; intron 30

  ENST00000350773 ; TSC2-004; intron 31

  ENST00000353929 ; TSC2-201; intron 31

  ENST00000219476 ; TSC2-001; intron 32

Clustered miRNAs

< 10kb from hsa-mir-4516

• hsa-mir-4516: chr16: 2133119-2133204 [+]
• hsa-mir-3180-5: chr16: 2135977-2136129 [-]

Database links

• EntrezGene:MIR4516
• HGNC:MIR4516
• RNAcentral:URS000075C976_9606
• miRBase Tracker:MI0016882

Mature sequence hsa-miR-4516

• Accession: MIMAT0019053
• Sequence: 2 - gggagaagggucggggc - 18
• Deep sequencing: 5555 reads, 134 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00000BF7F9_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4516
  • TargetScanVert:hsa-miR-4516
  • miRDB:hsa-miR-4516

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).