Stem-loop sequence hsa-mir-4488

Accession

MI0016849 (change log)

Symbol

HGNC:MIR4488

Description

Homo sapiens miR-4488 stem-loop

Gene family

MIPF0001623; mir-4488

Literature search

5 open access papers mention hsa-mir-4488
(8 sentences)

Stem-loop

   -   ag        -  cc      ggg    c 
5'  ggu  ggggcggg cu  ggcgcu   accc a
    |||  |||||||| ||  ||||||   |||| c
3'  ccg  ccccgccc gg  ccgcgg   uggg u
   c   --        c  uu      ---    a 

Deep sequencing

7775 reads, 67.8 reads per million, 146 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 61508596-61508657 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000398516 ; DAGLA-001; 3'UTR (exon 19)

  OTTHUMT00000398517 ; DAGLA-002; exon 19

  ENST00000257215 ; DAGLA-001; 3'UTR (exon 19)

  ENST00000540717 ; DAGLA-002; exon 19

Database links

• EntrezGene:MIR4488
• HGNC:MIR4488
• RNAcentral:URS000075B350_9606
• miRBase Tracker:MI0016849

Mature sequence hsa-miR-4488

• Accession: MIMAT0019022
• Sequence: 4 - agggggcgggcuccggcg - 21
• Deep sequencing: 7773 reads, 146 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000419B5A_9606
• Predicted targets:
  • TargetMiner:hsa-miR-4488
  • TargetScanVert:hsa-miR-4488
  • miRDB:hsa-miR-4488

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).