Stem-loop sequence hsa-mir-548h-5

Accession

MI0016751 (change log)

Symbol

HGNC:MIR548H5

Description

Homo sapiens miR-548h-5 stem-loop

Gene family

MIPF0000317; mir-548

Literature search

43 open access papers mention hsa-mir-548h-5
(147 sentences)

Stem-loop

   a            c        u  -   c 
5'  caaaaguaaucg gguuuuug ca uua u
    |||||||||||| |||||||| || |||  
3'  guuuucguuggc ccaaaaau gu aau u
   c            a        -  c   u 

Deep sequencing

5564 reads, 2.16 reads per million, 139 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr6: 131792172-131792231 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR548H5
• HGNC:MIR548H5
• RNAcentral:URS0000759BB0_9606
• miRBase Tracker:MI0016751

Mature sequence hsa-miR-548h-5p

• Accession: MIMAT0005928
• Previous IDs: hsa-miR-548h
• Sequence: 3 - aaaaguaaucgcgguuuuuguc - 24
• Deep sequencing: 29178 reads, 146 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00003E16D3_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548h-5p
  • TargetScanVert:hsa-miR-548h-5p
  • miRDB:hsa-miR-548h-5p
  • microrna.org:hsa-miR-548h-5p

References

1. PMID:20733160 "Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs" Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI, Blood. 116:e118-e127(2010).