miRBase entry: hvu-MIR166b

Stem-loop hvu-MIR166b


Accession
MI0016742
Description
Hordeum vulgare hvu-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
9 open access papers mention hvu-MIR166b
(34 sentences)

Sequence

ggggaauguugucugguccgagaccuaacaccgggcggaauggcggauucagcugcagcuaagcaagcuaggugggggguuUCGGACCAGGCUUCAUUCCCC
((((((((..((((((((((((((((..((((.(((.(..((((.............))))..)..))).))))..))))))))))))))))..))))))))

Structure
        uu                aa    g   -g aa    ggauu 
ggggaaug  gucugguccgagaccu  cacc ggc  g  uggc     c
||||||||  ||||||||||||||||  |||| |||  |  ||||     a
CCCCUUAC  CGGACCAGGCUuuggg  gugg ucg  c  aucg     g
        UU                gg    a   aa ga    acguc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR166b

Accession MIMAT0018500
Description Hordeum vulgare hvu-miR166b mature miRNA
Sequence 82 - UCGGACCAGGCUUCAUUCCCC - 102
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20676715
    Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
    "Kantar M, Unver T, Budak H"
    "Funct Integr Genomics (2010) 10:493-507

  2. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129