miRBase entry: csi-MIR3954

Stem-loop csi-MIR3954


Accession
MI0016739
Description
Citrus sinensis csi-MIR3954 precursor miRNA

Literature search
2 open access papers mention csi-MIR3954
(3 sentences)

Sequence

uuuacuuggcUGGACAGAGAAAUCACGGUCAagucucuucuuguucaggaaacgauugaugauuucuucuucaucugguggauggaa
((((.((.((((((.(((((((((((((((..((.((((.......)))).))))))).))))))).)))...)))))).)))))).

Structure
-    c  g      --C   -       -     Aa  c    cu 
 uuua uu gcUGGA   AGA GAAAUCA CGGUC  gu ucuu  u
 |||| || ||||||   ||| ||||||| |||||  || ||||  g
 aggu ag uggucu   ucu cuuuagu guuag  ca agga  u
a    -  g      acu   u       a     --  a    cu 


Annotation confidence Not enough data
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Genome context
chr7: 20108227-20108313 [-]

Database links

Mature csi-miR3954

Accession MIMAT0018497
Description Citrus sinensis csi-miR3954 mature miRNA
Sequence 11 - UGGACAGAGAAAUCACGGUCA - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246