Stem-loop sequence csi-MIR3954

Accession

MI0016739 (change log)

Description

Citrus sinensis miR3954 stem-loop

Literature search

2 open access papers mention csi-MIR3954
(3 sentences)

Stem-loop

   --------------------------------------------------uuu         gaca  g 
5'                                                      acuuggcug    ga a
                                                        |||||||||    ||  
3'                                                      ugaacuggc    cu a
   aagguagguggucuacuucuucuuuaguaguuagcaaaggacuuguucuucuc         ---a  a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr7: 20108227-20108313 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016739

Mature sequence csi-miR3954

• Accession: MIMAT0018497
• Sequence: 11 - uggacagagaaaucacgguca - 31
• Evidence: experimental; Illumina [1]

References

1. PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).