Stem-loop sequence csi-MIR3953

Accession

MI0016738 (change log)

Description

Citrus sinensis miR3953 stem-loop

Literature search

1 open access papers mention csi-MIR3953
(1 sentences)

Stem-loop

   u  --au  uc     a  -       c   acaga    ucauucc u  au 
5'  gg    aa  ugaug cu gcagagc cag     ggcg       g gc  c
    ||    ||  ||||| || ||||||| |||     ||||       | ||   
3'  cc    uu  gcugc ga cgucuug guu     cugc       c cg  a
   u  gucu  ga     c  a       a   ---ag    cccacua -  au 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr7: 20081221-20081321 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016738

Mature sequence csi-miR3953

• Accession: MIMAT0018496
• Sequence: 71 - uugaguucugcaagccgucga - 91
• Evidence: experimental; Illumina [1]

References

1. PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).