miRBase entry: csi-MIR482c

Stem-loop csi-MIR482c


Accession
MI0016737
Description
Citrus sinensis csi-MIR482c precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
5 open access papers mention csi-MIR482c
(8 sentences)

Sequence

uaaaauuuuuGGAAUUGGGUGCUAGGGAAGGuuuuguuugacuugucugucauaacuaaauuaauuUUCCCUAGUCCCCCUAUUCCUAugauuuuc
.((((((...(((((.(((.(((((((((((((..(((((((......)))).)))......))))))))))))).)))..)))))...)))))).

Structure
u      uuu     -U   U             ----uu   -    uu 
 aaaauu   GGAAU  GGG GCUAGGGAAGGuu      guu ugac  g
 ||||||   |||||  ||| |||||||||||||      ||| ||||   
 uuuuag   CCUUA  CCC UGAUCCCUUuuaa      caa acug  u
c      uAU     UC   C             uuaaau   u    uc 


Annotation confidence Not enough data
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Genome context
chr2: 9927230-9927325 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from csi-MIR482c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR482c-3p

Accession MIMAT0018495
Description Citrus sinensis csi-miR482c-3p mature miRNA
Sequence 67 - UUCCCUAGUCCCCCUAUUCCUA - 88
Evidence experimental
Illumina [1-2]

Mature csi-miR482c-5p

Accession MIMAT0037416
Description Citrus sinensis csi-miR482c-5p mature miRNA
Sequence 11 - GGAAUUGGGUGCUAGGGAAGG - 31
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113