miRBase entry: csi-MIR3952

Stem-loop csi-MIR3952


Accession
MI0016736
Description
Citrus sinensis csi-MIR3952 precursor miRNA


Sequence

uauucuuucauguGCUGUAGAUAGGCCCUUCAACcucggaaaccucaccauggacugggagcgaaggaagugggaucugaugguuggcauuguagguggcaagcugcaaaagaaagaugacguuuucaaaguUGAAGGGCCUUUCUAGAGCACuggaauccau
.....(((((.(((((.((((.((((((((((((...((((((.(((((((...((........))...))))((((....))))....((((((.(....).))))))........))).))))))...)))))))))))).)))).)))))))))).....

Structure
uauuc     u     G    U            cuc      c   ccauggacugggagcgaaggaagugggaucugaugguuggca      g g 
     uuuca guGCU UAGA AGGCCCUUCAAC   ggaaac uca                                          uuguag u g
     ||||| ||||| |||| ||||||||||||   |||||| |||                                          |||||| |  
     aaggu CACGA AUCU UCCGGGAAGUug   cuuuug agu                                          aacguc a c
uaccu     -     G    U            aaa      c   ----------------------------------agaaagaa      g a 


Annotation confidence Not enough data
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Genome context
chr8: 16164905-16165067 [+]

Database links

Mature csi-miR3952-3p

Accession MIMAT0018494
Description Citrus sinensis csi-miR3952-3p mature miRNA
Sequence 133 - UGAAGGGCCUUUCUAGAGCAC - 153
Evidence experimental
Illumina [1-2]

Mature csi-miR3952-5p

Accession MIMAT0037415
Description Citrus sinensis csi-miR3952-5p mature miRNA
Sequence 14 - GCUGUAGAUAGGCCCUUCAAC - 34
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113