miRBase entry: csi-MIR3951a

Stem-loop csi-MIR3951a


Accession
MI0016734
Description
Citrus sinensis csi-MIR3951a precursor miRNA

Literature search
1 open access papers mention csi-MIR3951a
(3 sentences)

Sequence

cauaagaggagugcuuggcaUAGAUAAAGAUGAGAGAAAAAuaugagagaaagaugagagaaauuuguucccucuacacccacccacucucucuucucuuuucuucuuUUUCUCUUAUCGUUAUCUGUgcuuagcauuuuucuucgau
...((((((((((((.(((((((((((.(((((((((((((...((((((((((.((((((..........................)))))).))).))))))).))))))))))))).))))))))))).))))))))))))....

Structure
-cau            u           A             uau       -   u      aauuuguucccu 
    aagaggagugcu ggcaUAGAUAA GAUGAGAGAAAAA   gagagaa aga gagaga            c
    |||||||||||| ||||||||||| |||||||||||||   ||||||| ||| ||||||             
    uucuuuuuacga ucgUGUCUAUU CUAUUCUCUUUuu   uucuuuu ucu cucucu            u
uagc            u           G             --c       c   u      cacccacccaca 


Annotation confidence Not enough data
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Genome context
chr4: 7896098-7896245 [-]

Database links

Mature csi-miR3951a-5p

Accession MIMAT0018492
Description Citrus sinensis csi-miR3951a-5p mature miRNA
Sequence 21 - UAGAUAAAGAUGAGAGAAAAA - 41
Evidence experimental
Illumina [1-2]

Mature csi-miR3951a-3p

Accession MIMAT0037414
Description Citrus sinensis csi-miR3951a-3p mature miRNA
Sequence 109 - UUUCUCUUAUCGUUAUCUGU - 128
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113