miRBase entry: csi-MIR3950

Stem-loop csi-MIR3950


Accession
MI0016733
Description
Citrus sinensis csi-MIR3950 precursor miRNA

Literature search
1 open access papers mention csi-MIR3950
(1 sentences)

Sequence

aaaacccaauUUUUUCGGCAACAUGAUUUCUuaguagaaaccaaaauuuacuuuuugugccaacaggauuuauaauaagaauuuaugcaaacggauuucuuuuagaagucaaauuuugacaagauugaucaucaucguuggugggaaacaccaaguuu
......(((((((.((((.((..((((((((....(((((((..........((((((....))))))..(((((.......))))).....)).)))))...))))))))..)))))).)))))))..........((((((.....))))))....

Structure
-------------------------aaaacc       U    C  CA        uagu     -  --------------aaaauuuacu      g 
                               caauUUU UCGG AA  UGAUUUCU    agaaa cc                        uuuugu c
                               ||||||| |||| ||  ||||||||    ||||| ||                        ||||||  
                               guuagaa aguu uu  acugaaga    ucuuu gg                        aggaca c
uuugaaccacaaagggugguugcuacuacua       c    -  aa        -uuu     a  caaacguauuuaagaauaauauuu      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature csi-miR3950

Accession MIMAT0018491
Description Citrus sinensis csi-miR3950 mature miRNA
Sequence 11 - UUUUUCGGCAACAUGAUUUCU - 31
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246