miRBase entry: csi-MIR1515a

Stem-loop csi-MIR1515a


Accession
MI0016731
Description
Citrus sinensis csi-MIR1515a precursor miRNA

Literature search
1 open access papers mention csi-MIR1515a
(1 sentences)

Sequence

ucgauuugcaUCAUUUUUGCGUGCAAUGAUCCcgaauuugcucucuuacucaacuuucuuuuuaauuuacaaauauucauguuuauugguuugaaaaauagaaaaaaaaauucuaauuuuuguuaacggggaucuggaucauucacgcaaaaaugauuugacucgugaguuggc
.((((((((((((((((((((((.((((((((.((......(((((....(((.((((...(((((..(((........)))..)))))...))))..(((((.......)))))....))).....))))))).)))))))))))))))))))))).......))))))))..

Structure
-u        -------              C        c  auuugc     -uacu   ----------------------c    uuu     uu   aau 
  cgauuugc       aUCAUUUUUGCGUG AAUGAUCC ga      ucucu     caa                       uuuc   uuaau  aca   a
  ||||||||       |||||||||||||| |||||||| ||      |||||     |||                       ||||   |||||  |||    
  guugagug       uaguaaaaacgcac uuacuagg cu      agggg     guu                       aaag   gguua  ugu   u
cg        cucaguu              -        u  ------     caauu   uuuaaucuuaaaaaaaaagauaa    uuu     uu   acu 


Annotation confidence Not enough data
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Genome context
chr1: 22741515-22741688 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from csi-MIR1515a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR1515a

Accession MIMAT0018489
Description Citrus sinensis csi-miR1515a mature miRNA
Sequence 11 - UCAUUUUUGCGUGCAAUGAUCC - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246