Stem-loop csi-MIR530b

Accession

MI0016725

Description

Citrus sinensis csi-MIR530b precursor miRNA

Gene family

MIPF0000521; MIR530

Literature search

1 open access papers mention csi-MIR530b
(6 sentences)

Sequence

auccuuuaucUGCAUUUGCACCUGCAUCUUGuugcguuaucugguucugguucguaaaagccaaagcacaagaagagccaauagccgucggcagauaugguggcagcaugggguuauaugcaucaAGGUGCAGUUGCAAGUGCAGAugaaugcc
....((((((((((((((((.((((((((((.(((((.((((.((..((((((......((....)).......))))))...((.((((.((....)).)))).)))).))))...))))).)))))))))).))))))))))))))))....

Structure

aucc                C          u     --u    g  -------------------------uc      -guaaaa  c 
    uuuaucUGCAUUUGCA CUGCAUCUUG ugcgu   aucu gu                           ugguuc       gc a
    |||||||||||||||| |||||||||| |||||   |||| ||                           ||||||       ||  
    aaguAGACGUGAACGU GACGUGGAac acgua   uggg ua                           accgag       cg a
ccgu                U          u     uau    g  cgacggugguauagacggcugccgaua      aagaaca  a 

Annotation confidence Not enough data

Genome context

chr8: 18976494-18976647 [-]

Mature csi-miR530b-5p

• Accession: MIMAT0018483
• Description: Citrus sinensis csi-miR530b-5p mature miRNA
• Sequence: 11 - UGCAUUUGCACCUGCAUCUUG - 31
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR530b-3p

• Accession: MIMAT0037413
• Description: Citrus sinensis csi-miR530b-3p mature miRNA
• Sequence: 126 - AGGUGCAGUUGCAAGUGCAGA - 146
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113