miRBase entry: csi-MIR482b

Stem-loop csi-MIR482b


Accession
MI0016723
Description
Citrus sinensis csi-MIR482b precursor miRNA
Gene family
MIPF0000403; MIR482

Literature search
4 open access papers mention csi-MIR482b
(7 sentences)

Sequence

aggaaauuucuggAAUGGGAGGCUUGGCAAGAAGcgaucuauuuuucuuguucaauaaaaaagaaaaagaaaauuuuUCUUGCCCACCCCUCCCAUUCCuuggauuucc
.((((((((..(((((((((((...(((((((((.......((((((((...........)))))))).......)))))))))....)))))))))))..))))))))

Structure
a        cu           -CUU         cgaucua        guuc 
 ggaaauuu  ggAAUGGGAGG    GGCAAGAAG       uuuuucuu    a
 ||||||||  |||||||||||    |||||||||       ||||||||    a
 ccuuuagg  CCUUACCCUCC    CCGUUCUuu       aaaaagaa    u
-        uu           CCAC         uuaaaag        aaaa 


Annotation confidence Not enough data
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Genome context
chr2: 9932506-9932614 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from csi-MIR482b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csi-miR482b-3p

Accession MIMAT0018481
Description Citrus sinensis csi-miR482b-3p mature miRNA
Sequence 78 - UCUUGCCCACCCCUCCCAUUCC - 99
Evidence experimental
Illumina [1-2]

Mature csi-miR482b-5p

Accession MIMAT0037411
Description Citrus sinensis csi-miR482b-5p mature miRNA
Sequence 14 - AAUGGGAGGCUUGGCAAGAAG - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113