miRBase entry: csi-MIR408

Stem-loop csi-MIR408


Accession
MI0016715
Description
Citrus sinensis csi-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
3 open access papers mention csi-MIR408
(13 sentences)

Sequence

agguaauaauaacucuuuggugugugcgugagagagaggcaagaagcaagagacaaaagACGGGGAACAGGCAGAGCAUGgauggaaccauuaacagguucucuguuuuggcuccucccAUGCACUGCCUCUUCCCUGGCucucugccuuccu
............((((((.(((....))).))))))(((.(((..(((.((((.....(.(((((((.((((((.((((((..(((.(((..(((((.....))))).))).)))..)))))).)))))).))))))).))))))))))))))

Structure
agguaauaauaacucuuuggugugugcgugagagag   c   aa   a    caaaa A       C      A      au   a   uu     g 
                                    agg aag  gca gaga     g CGGGGAA AGGCAG GCAUGg  gga cca  aacag u
                                    ||| |||  ||| ||||     | ||||||| |||||| ||||||  ||| |||  ||||| u
                                    ucc uuc  cgu cucu     C GUCCCUU UCCGUC CGUAcc  ccu ggu  uuguc c
------------------------------------   -   --   -    ----- G       C      A      cu   c   -u     u 


Annotation confidence Not enough data
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Genome context
JH999133.1: 795393-795545 [-]

Database links

Mature csi-miR408-3p

Accession MIMAT0018472
Description Citrus sinensis csi-miR408-3p mature miRNA
Sequence 120 - AUGCACUGCCUCUUCCCUGGC - 140
Evidence experimental
Illumina [1-2]

Mature csi-miR408-5p

Accession MIMAT0037406
Description Citrus sinensis csi-miR408-5p mature miRNA
Sequence 60 - ACGGGGAACAGGCAGAGCAUG - 80
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113