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miRBase |
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Stem-loop sequence csi-MIR399c |
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Accession | MI0016710 (change log) | |||||||
Description | Citrus sinensis miR399c stem-loop | |||||||
Gene family | MIPF0000015; MIR399 | |||||||
Literature search |
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4 open access papers mention csi-MIR399c | |||||||
Stem-loop |
ucaauacaaagugacaa uu - aa u c u ---u ----- g 5' ugugg gag gaau cag gcagu cuccuuuggcg gcaga ugcaaa gagauaau c ||||| ||| |||| ||| ||||| ||||||||||| ||||| |||||| |||||||| 3' acgcu cuc cuua guc cguua gaggaaaccgu ugucu acguuu cuuuauua a ------------gaucg -- a cc c a u uccu acuua u |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence csi-miR399c-5p |
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Accession | MIMAT0037401 |
Sequence |
36 - gugcaguccuccuuuggcgug - 56 |
Evidence | experimental; Illumina [2] |
Mature sequence csi-miR399c-3p |
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Accession | MIMAT0018467 |
Sequence |
109 - ugccaaaggagaauugcccug - 129 |
Evidence | experimental; Illumina [1-2] |
References |
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1 |
PMID:20398412
"Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
BMC Genomics. 11:246(2010).
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2 |
PMID:28054378
"MicroRNA annotation of plant genomes - Do it right or not at all"
Bioessays. [Epub prior to print](2017).
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