miRBase entry: csi-MIR397

Stem-loop csi-MIR397


Accession
MI0016708
Description
Citrus sinensis csi-MIR397 precursor miRNA
Gene family
MIPF0000120; MIR397

Literature search
5 open access papers mention csi-MIR397
(10 sentences)

Sequence

ccagauugaaaaaaacaUCAUUGAGUGCAGCGUUGAUGaauauuugucggugcuuugccaauauuucucuauacuagccaggauucuuucACCAGCGCUGCACUCGAUCAUguuuuuuagcucugcugguucaggauuauccagauaauacgcaca
.((((....(((((((((.((((((((((((((((.((((.....(((...(((.....................)))...)))...)))).)))))))))))))))).)))))))))...))))((((...........))))............

Structure
------------------------------c    uuga         C                A    uauuu   ggu   uugccaaua 
                               caga    aaaaaacaU AUUGAGUGCAGCGUUG UGaa     guc   gcu         u
                               ||||    ||||||||| |||||||||||||||| ||||     |||   |||         u
                               gucu    uuuuuugUA UAGCUCACGUCGCGAC Acuu     uag   cga         u
acacgcauaauagaccuauuaggacuugguc    -cga         C                C    --ucu   gac   ucauaucuc 


Annotation confidence Not enough data
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Genome context
chr2: 4101151-4101306 [-]

Database links

Mature csi-miR397-5p

Accession MIMAT0018465
Description Citrus sinensis csi-miR397-5p mature miRNA
Sequence 18 - UCAUUGAGUGCAGCGUUGAUG - 38
Evidence experimental
Illumina [1-2]

Mature csi-miR397-3p

Accession MIMAT0037400
Description Citrus sinensis csi-miR397-3p mature miRNA
Sequence 91 - ACCAGCGCUGCACUCGAUCAU - 111
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113