Stem-loop sequence csi-MIR397

Accession

MI0016708 (change log)

Description

Citrus sinensis miR397 stem-loop

Gene family

MIPF0000120; MIR397

Literature search

5 open access papers mention csi-MIR397
(10 sentences)

Stem-loop

   ---------------------------    auu  ---         c                a    uauuu   -g u   uugccaaua 
5'                            ccag   ga   aaaaaacau auugagugcagcguug ugaa     guc  g gcu         u
                              ||||   ||   ||||||||| |||||||||||||||| ||||     |||  | |||         u
3'                            gguc   cu   uuuuuugua uagcucacgucgcgac acuu     uag  c cga         u
   acacgcauaauagaccuauuaggacuu    -gu  cga         c                c    --ucu   ga -   ucauaucuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr2: 4101151-4101306 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016708

Mature sequence csi-miR397-5p

• Accession: MIMAT0018465
• Sequence: 18 - ucauugagugcagcguugaug - 38
• Evidence: experimental; Illumina [1-2]

Mature sequence csi-miR397-3p

• Accession: MIMAT0037400
• Sequence: 91 - accagcgcugcacucgaucau - 111
• Evidence: experimental; Illumina [2]

References

1. PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).
2. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).