miRBase entry: csi-MIR395a

Stem-loop csi-MIR395a


Accession
MI0016705
Description
Citrus sinensis csi-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
4 open access papers mention csi-MIR395a
(31 sentences)

Sequence

ugucuccgggaguuccuccgaucacuucauuggggcuauaugaucauuuagagaaaauuugucaccccaCUGAAGUGUUUGGGGGAACUCugggugccac
((.(.((.(((((((((((((.(((((((.(((((.....((((.((((.....))))..))))))))).))))))).))))))))))))).)).).)).

Structure
-  u u  g             u       u     cuaua    -c    a 
 ug c cc ggaguuccuccga cacuuca ugggg     ugau  auuu g
 || | || ||||||||||||| ||||||| |||||     ||||  |||| a
 ac g gg uCUCAAGGGGGUU GUGAAGU acccc     acug  uaaa g
c  c u  g             U       C     -----    uu    a 


Annotation confidence Not enough data
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Genome context
chr5: 25578967-25579066 [-]

Database links

Mature csi-miR395a

Accession MIMAT0018462
Description Citrus sinensis csi-miR395a mature miRNA
Sequence 70 - CUGAAGUGUUUGGGGGAACUC - 90
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113