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miRBase |
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Stem-loop sequence csi-MIR172c |
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Accession | MI0016701 (change log) | ||||
Description | Citrus sinensis miR172c stem-loop | ||||
Gene family | MIPF0000035; MIR172 | ||||
Literature search |
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5 open access papers mention csi-MIR172c | ||||
Stem-loop |
------------ gu a g c a c uu -uag - a u u uuuua 5' acu uugc guug agca caucaagauuc caaa ua agggu uga guggag uaa gg ggcua u ||| |||| |||| |||| ||||||||||| |||| || ||||| ||| |||||| ||| || ||||| 3' uga agcg cgac ucgu guaguucuaag guuu gu ucucg acu cacuuc guu cc ccggu u auauuaaaucgg au a g a - u -u uuaa u - - - uuuuu |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence csi-miR172c-5p |
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Accession | MIMAT0037397 |
Sequence |
14 - ggagcaccaucaagauucaca - 34 |
Evidence | experimental; Illumina [2] |
Mature sequence csi-miR172c-3p |
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Accession | MIMAT0018458 |
Sequence |
119 - uggaaucuugaugaugcugcag - 140 |
Evidence | experimental; Illumina [1-2] |
References |
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1 |
PMID:20398412
"Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
BMC Genomics. 11:246(2010).
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2 |
PMID:28054378
"MicroRNA annotation of plant genomes - Do it right or not at all"
Bioessays. [Epub prior to print](2017).
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