Stem-loop sequence csi-MIR167b

Accession

MI0016697 (change log)

Description

Citrus sinensis miR167b stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

4 open access papers mention csi-MIR167b
(5 sentences)

Stem-loop

   -------------a   g   -   - uau   a          a         -  a u      cuu 
5'               ucg gca cca c   cag ugaagcugcc gcaugaucu ua c uuccuc   u
                 ||| ||| ||| |   ||| |||||||||| ||||||||| || | ||||||    
3'               agc cgu ggu g   guc acuuugacgg cguacuaga au g aaggag   g
   gaccugagcauuaa   a   u   u cuu   c          -         c  a u      cuc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Csi_valencia_1.0; GCA_000317415.1): chr9: 4850348-4850470 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016697

Mature sequence csi-miR167b-5p

• Accession: MIMAT0018454
• Sequence: 20 - ugaagcugccagcaugaucuu - 40
• Evidence: experimental; Illumina [1-2]

Mature sequence csi-miR167b-3p

• Accession: MIMAT0037395
• Sequence: 71 - agaucaugcggcaguuucacc - 91
• Evidence: experimental; Illumina [2]

References

1. PMID:20398412 "Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type" Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X BMC Genomics. 11:246(2010).
2. PMID:28054378 "MicroRNA annotation of plant genomes - Do it right or not at all" Taylor RS, Tarver JE, Foroozani A, Donoghue PC Bioessays. [Epub prior to print](2017).