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miRBase |
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Stem-loop sequence csi-MIR167c |
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Accession | MI0016696 (change log) | ||||
Description | Citrus sinensis miR167c stem-loop | ||||
Gene family | MIPF0000023; MIR167_1 | ||||
Literature search |
4 open access papers mention csi-MIR167c | ||||
Stem-loop |
uuugagagauugaagcugccagcaugaucugguaaucaaccuuuuuguauauauauauauauauuaauuccuuauaguuuuuagauuuaauuucuuuuaauuagauccaugguuucaauucuauugaauaaauggugggguuuuauauuuucgugcaa -aa aua aua u uc aa uuuuuuaguuuuauu uuu ccua 5' uuauu gagg gaugga gcgccuu aaa c ucac uugaucuu ugccc a ||||| |||| |||||| ||||||| ||| | |||| |||||||| ||||| a 3' aguag cuuc uuauuu uguggga uuu g agug aauuggaa auggg a ----------------------------------------------------------------------------------------------------------------------uuacucauuaacuucgacguucuacuggacuaccuuggua aug -ga -ag u ga ag ------------uau --- aauu |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Database links |
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Mature sequence csi-miR167c-5p |
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Accession | MIMAT0018453 |
Sequence |
11 - ugaagcugccagcaugaucug - 31 |
Evidence | experimental; Illumina [1-2] |
Mature sequence csi-miR167c-3p |
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Accession | MIMAT0037394 |
Sequence |
313 - aggucaucuugcagcuucaau - 333 |
Evidence | experimental; Illumina [2] |
References |
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1 |
PMID:20398412
"Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type"
BMC Genomics. 11:246(2010).
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2 |
PMID:28054378
"MicroRNA annotation of plant genomes - Do it right or not at all"
Bioessays. [Epub prior to print](2017).
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