miRBase entry: hsa-mir-642b

Stem-loop hsa-mir-642b


Accession
MI0016685
Symbol
HGNC: MIR642B
Description
Homo sapiens hsa-mir-642b precursor miRNA
Gene family
MIPF0000468; mir-642

Literature search
7 open access papers mention hsa-mir-642b
(31 sentences)

Sequence

1442 reads, 16 reads per million, 92 experiments
gaguugggaGGUUCCCUCUCCAAAUGUGUCUugaucccccaccccaAGACACAUUUGGAGAGGGACCCucccaacuc
(((((((((((.(((((((((((((((((((((...........))))))))))))))))))))).)))))))))))

Structure
           U                     aucc 
gaguugggaGG UCCCUCUCCAAAUGUGUCUug    c
||||||||||| |||||||||||||||||||||    c
cucaacccuCC AGGGAGAGGUUUACACAGAac    c
           C                     ccca 


Annotation confidence High
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Genome context
chr19: 45674932-45675008 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-642b
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-642b is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-642b-3p

Accession MIMAT0018444
Description Homo sapiens hsa-miR-642b-3p mature miRNA
Sequence 47 - AGACACAUUUGGAGAGGGACCC - 68
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature hsa-miR-642b-5p

Accession MIMAT0022736
Description Homo sapiens hsa-miR-642b-5p mature miRNA
Sequence 10 - GGUUCCCUCUCCAAAUGUGUCU - 31
Evidence not_experimental

References

  1. PubMed ID: 20459774
    Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls
    Witten D, Tibshirani R, Gu SG, Fire A, Lui WO
    BMC Biol (2010) 8:58