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miRBase |
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Stem-loop sequence ssc-mir-199a-1 |
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Accession | MI0016621 (change log) | |||||
Description | Sus scrofa miR-199a-1 stem-loop | |||||
Gene family | MIPF0000040; mir-199 | |||||
Literature search |
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18 open access papers mention ssc-mir-199a-1 | |||||
Stem-loop |
u - gcc u c --uca ac 5' cc guc ccagugu cagacuac ugu gg a || ||| ||||||| |||||||| ||| || 3' gg cag gguuaca gucugaug aca cc a g u auu c - uguug gu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
Mature sequence ssc-miR-199a-5p |
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Accession | MIMAT0013874 |
Sequence |
9 - cccaguguucagacuaccuguuc - 31 |
Deep sequencing | 28303 reads, 15 experiments |
Evidence | experimental; cloned [1], Illumina [2-3] |
Mature sequence ssc-miR-199a-3p |
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Accession | MIMAT0013875 |
Sequence |
48 - acaguagucugcacauugguua - 69 |
Deep sequencing | 68359 reads, 15 experiments |
Evidence | experimental; cloned [1], Illumina [2-4] |
References |
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1 |
PMID:20180025
"Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue"
Mol Biol Rep. 37:3567-3574(2010).
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2 |
PMID:19917043
"MicroRNA identity and abundance in porcine skeletal muscles determined by deep sequencing"
Anim Genet. 41:159-168(2010).
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3 |
PMID:21312241
"MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing"
J Cell Biochem. 112:1318-1328(2011).
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4 |
PMID:24499489
"Exploration of microRNAs in porcine milk exosomes"
BMC Genomics. 15:100(2014).
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