Stem-loop sequence gma-MIR396e

Accession

MI0016586 (change log)

Description

Glycine max miR396e stem-loop

Gene family

MIPF0000047; MIR396

Literature search

25 open access papers mention gma-MIR396e
(144 sentences)

Stem-loop

        c          u       c     ugugaggcuucucuccaaugaagguu 
5' gugau uuccacagcu ucuugaa ugugu                          u
   ||||| |||||||||| ||||||| |||||                           
3' cacua aaggugucga agaacuu acacg                          a
        a          u       a     aguaucuuaaagaaaacguaucccau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr17: 35037484-35037597 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016586

Mature sequence gma-miR396e

• Accession: MIMAT0018345
• Sequence: 7 - uuccacagcuuucuugaacugu - 28
• Evidence: experimental; Illumina [1], 454 [2]

References

1. PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).
2. PMID:21504877 "MicroRNAs in the shoot apical meristem of soybean" Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL J Exp Bot. 62:2495-2506(2011).