miRBase entry: gma-MIR4416a

Stem-loop gma-MIR4416a


Accession
MI0016585
Description
Glycine max gma-MIR4416a precursor miRNA
Gene family
MIPF0001389; MIR4416

Literature search
5 open access papers mention gma-MIR4416a
(11 sentences)

Sequence

cuuugaucugggugagagaaacgcguaucgauggauuggguucaguucuggucucacacgguuuguucuaacaauuuguacugacuguguuuugaucgauACGGGUCGCUCUCACCUAGGccagaguugc
(((((.((((((((((((..((.(((((((((((((((((......)))))))).((((((((.((.(.........).)).))))))))....))))))))).))..)))))))))))).)))))....

Structure
----     a            aa  g         ggauuggguucaguucuggucuc        u  u uaa 
    cuuug ucugggugagag  ac cguaucgau                       acacgguu gu c   c
    ||||| ||||||||||||  || |||||||||                       |||||||| || |   a
    gagac GGAUCCACUCUC  UG GCAuagcua                       ugugucag ca g   a
cguu     c            GC  G         -------------------guuu        u  u uuu 


Annotation confidence Not enough data
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Genome context
chr19: 40891340-40891469 [-]

Database links

Mature gma-miR4416a

Accession MIMAT0018344
Description Glycine max gma-miR4416a mature miRNA
Sequence 101 - ACGGGUCGCUCUCACCUAGG - 120
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153