miRBase entry: gma-MIR4401a

Stem-loop gma-MIR4401a


Accession
MI0016560
Description
Glycine max gma-MIR4401a precursor miRNA
Gene family
MIPF0001147; MIR4368

Literature search
1 open access papers mention gma-MIR4401a
(1 sentences)

Sequence

cgucuuugaaugccuacuuucaaagacauuguugagguaagcaccgucuuugaaaguacgcauucuaagauggugcuuaccucaACAACGUCUUUGAAAGUAGGCAUUcuaagacg
((((((.((((((((((((((((((((.((((((((((((((((((((((.(((........))).)))))))))))))))))))))).)))))))))))))))))))).))))))

Structure
      u                    a                      u   agu 
cgucuu gaaugccuacuuucaaagac uuguugagguaagcaccgucuu gaa   a
|||||| |||||||||||||||||||| |||||||||||||||||||||| |||    
gcagaa cUUACGGAUGAAAGUUUCUG AACAacuccauucgugguagaa cuu   c
      u                    C                      u   acg 


Annotation confidence Not enough data
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Genome context
chr14: 28771219-28771334 [+]

Database links

Mature gma-miR4401a

Accession MIMAT0018319
Description Glycine max gma-miR4401a mature miRNA
Sequence 85 - ACAACGUCUUUGAAAGUAGGCAUU - 108
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14

  2. PubMed ID: 24475082
    Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
    Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
    PLoS One (2014) 9:e86153