Stem-loop sequence tae-MIR171b

Accession

MI0016468 (change log)

Description

Triticum aestivum miR171b stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

19 open access papers mention tae-MIR171b
(54 sentences)

Stem-loop

   ugaguuaauccugcgaggggagugaacgc        ug          ag  a cu  c     agg 
5'                              gguauugg  cgguucaauc  ag g  gg gcccc   a
                                ||||||||  ||||||||||  || |  || |||||   g
3'                              cuauaacc  gccgaguuag  uc c  cc ugggg   g
   uccuccuacgcuaaguacucuuuggcgca        gu          cu  - cu  u     aac 

Deep sequencing

37159 reads, 169 reads per million, 116 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: 2D: 132845309-132845446 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016468

Mature sequence tae-miR171b

• Accession: MIMAT0018227
• Sequence: 92 - uugagccgugccaauaucacg - 112
• Deep sequencing: 36700 reads, 116 experiments
• Evidence: not experimental

References

1. PMID:18521122 "Data mining for miRNAs and their targets in the Triticeae" Dryanova A, Zakharov A, Gulick PJ Genome. 51:433-443(2008).