Stem-loop sequence tae-MIR398

Accession

MI0016466 (change log)

Description

Triticum aestivum miR398 stem-loop

Gene family

MIPF0000107; MIR398

Literature search

22 open access papers mention tae-MIR398
(76 sentences)

Stem-loop

   auac       aa    u      u   a              ---    c  ac      a 
5'     gcgagga  uucc gcgggg cga cugggaacacaugg   gaua ga  cgcuug u
       |||||||  |||| |||||| ||| ||||||||||||||   |||| ||  |||||| u
3'     cgcuccu  gagg cgcccc gcu gacucuuguguacu   cuau cu  gcgagc g
   ----       cc    u      c   g              caa    u  ca      a 

Deep sequencing

2880031 reads, 1.17e+04 reads per million, 116 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates	Overlapping transcripts
3B: 662632381-662632500 [+]	intergenic
3B: 663360015-663360134 [-]	intergenic

Database links

• miRBase Tracker:MI0016466

Mature sequence tae-miR398

• Accession: MIMAT0018225
• Sequence: 85 - uguguucucaggucgcccccg - 105
• Deep sequencing: 551994 reads, 116 experiments
• Evidence: not experimental

References

1. PMID:18521122 "Data mining for miRNAs and their targets in the Triticeae" Dryanova A, Zakharov A, Gulick PJ Genome. 51:433-443(2008).