miRBase entry: hvu-MIR171

Stem-loop hvu-MIR171


Accession
MI0016461
Description
Hordeum vulgare hvu-MIR171 precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
8 open access papers mention hvu-MIR171
(90 sentences)

Sequence

gcggguugauggccaggaacuccgacaagaggaggaugcugaaacggucacuaugaUGUUGGCUCGACUCACUCAGAccacgccggagggagccaucugcggcggcgguucUGAUUGAGCCGUGCCAAUAUCuuagugcucuuucaugcucgucccuugucgccaucacccac
..((((.((((((..((....))((((((.(((.((.(((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)))))..)).))))).)))).)).))))))))).))))))).))))).)))).)))))))))))))))))))..

Structure
gc    u      caggaacucc      a   g  u  -     c  u     u         U  A    C     -  -a     g   ga 
  gggu gauggc          gacaag gga ga gc ugaaa gg cacua gaUGUUGGC CG CUCA UCAGA cc  cgccg agg  g
  |||| ||||||          |||||| ||| || || ||||| || ||||| ||||||||| || |||| ||||| ||  ||||| |||   
  ccca cuaccg          cuguuc ccu cu cg acuuu uc gugau CUAUAACCG GC GAGU AGUcu gg  gcggc ucu  c
ca    -      ----------      -   g  -  u     c  -     u         U  C    U     u  cg     g   ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR171-3p

Accession MIMAT0018220
Description Hordeum vulgare hvu-miR171-3p mature miRNA
Sequence 112 - UGAUUGAGCCGUGCCAAUAUC - 132
Evidence experimental
Illumina [3], Northern [5]

Mature hvu-miR171-5p

Accession MIMAT0022971
Description Hordeum vulgare hvu-miR171-5p mature miRNA
Sequence 57 - UGUUGGCUCGACUCACUCAGA - 77
Evidence experimental
Illumina [4], Northern [5]

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443

  2. PubMed ID: 20676715
    Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
    "Kantar M, Unver T, Budak H"
    "Funct Integr Genomics (2010) 10:493-507

  3. PubMed ID: 21352554
    Discovery of barley miRNAs through deep sequencing of short reads
    Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
    BMC Genomics (2011) 12:129

  4. PubMed ID: 22489137
    Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
    Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
    Int J Mol Sci (2012) 13:2973-2984

  5. PubMed ID: 23324356
    Developmentally regulated expression and complex processing of barley pri-microRNAs
    Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
    BMC Genomics (2013) 14:34