Stem-loop isc-mir-305

Accession

MI0016444

Description

Ixodes scapularis isc-mir-305 precursor miRNA

Gene family

MIPF0000158; mir-305

Literature search

1 open access papers mention isc-mir-305
(2 sentences)

Sequence

cagucacuaguuaAUUGUACUUCAUCAGGUGCUCUggaguucgguucgcacaaccaggcaucuuuuggagugcaaaugauaaguggcacg
..((((((.((((.((((((((((..((((((.((((.((.((...)).))..))))))))))..)))))))))).)))).))))))...

Structure

-ca      a    A          UC      U    -a  u  g 
   gucacu guua UUGUACUUCA  AGGUGC CUgg  gu cg  
   |||||| |||| ||||||||||  |||||| ||||  || || u
   cgguga uagu aacgugaggu  ucuacg gacc  ca gc  
gca      a    a          uu      -    aa  c  u 

Annotation confidence Not enough data

Genome context

DS945001: 228261-228350 [-]

Mature isc-miR-305

• Accession: MIMAT0018920
• Description: Ixodes scapularis isc-miR-305 mature miRNA
• Sequence: 14 - AUUGUACUUCAUCAGGUGCUCU - 35
• Evidence: not_experimental

References

1. PubMed ID: 20702459
   A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata
   "Rota-Stabelli O, Campbell L, Brinkmann H, Edgecombe GD, Longhorn SJ, Peterson KJ, Pisani D, Philippe H, Telford MJ"
   "Proc Biol Sci (2011) 278:298-306