miRBase entry: dre-mir-3906

Stem-loop dre-mir-3906


Accession
MI0016407
Description
Danio rerio dre-mir-3906 precursor miRNA

Literature search
2 open access papers mention dre-mir-3906
(223 sentences)

Sequence

gauagaccuacagugaagcucugcauaaacucuuauuccagugggacuuguccaaaggucagauAAAAGCAUUUUGAAUGCAGAUUUuugagguuucuc
((.((((((.((..((((.(((((((...........((..((((.....))))..))(((((.........)))))))))))))))))))))))).))

Structure
  u      a  gu    c       aaacucuuauuccagugggacuuguccaaagg     uAA 
ga agaccu ca  gaag ucugcau                                ucaga   A
|| |||||| ||  |||| |||||||                                |||||   A
cu uuugga gu  uUUU AGACGUA                                AGUUU   G
  c      -  --    -       --------------------------------     UAC 


Annotation confidence Not enough data
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Comments
Hsu et al. named this sequence mir-In300 in [1].

Genome context
chr4: 21741758-21741856 [+]

Database links

Mature dre-miR-3906

Accession MIMAT0018177
Description Danio rerio dre-miR-3906 mature miRNA
Sequence 65 - AAAAGCAUUUUGAAUGCAGAUUU - 87
Evidence experimental
Northern [1]

References

  1. PubMed ID: 20236986
    Novel intronic microRNA represses zebrafish myf5 promoter activity through silencing dickkopf-3 gene
    "Hsu RJ, Lin CY, Hoi HS, Zheng SK, Lin CC, Tsai HJ"
    "Nucleic Acids Res (2010) 38:4384-4393