Stem-loop sequence tca-mir-309b

Accession

MI0016391 (change log)

Description

Tribolium castaneum miR-309b stem-loop

Literature search

2 open access papers mention tca-mir-309b
(15 sentences)

Stem-loop

   cauuu  c  uc     uc   u             u      a 
5'      gc ca  acauc  gac aacucgauucagu gauguu a
        || ||  |||||  ||| ||||||||||||| |||||| u
3'      cg gu  uguag  cug uugaguuggguca cuauag u
   cuacc  u  uu     cu   u             -      a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG5: 7175766-7175855 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-309b

• tca-mir-9d: ChLG5: 7174040-7174132 [+]
• tca-mir-2944b: ChLG5: 7174149-7174250 [+]
• tca-mir-309a: ChLG5: 7174273-7174360 [+]
• tca-mir-3893: ChLG5: 7175554-7175633 [+]
• tca-mir-309c: ChLG5: 7175649-7175737 [+]
• tca-mir-309b: ChLG5: 7175766-7175855 [+]
• tca-mir-3791: ChLG5: 7175867-7175951 [+]

Database links

• EntrezGene:Mir309b
• miRBase Tracker:MI0016391

Mature sequence tca-miR-309b-5p

• Accession: MIMAT0018886
• Sequence: 19 - cgacuaacucgauucaguug - 38
• Evidence: experimental; SOLID [1]

Mature sequence tca-miR-309b-3p

• Accession: MIMAT0018887
• Sequence: 53 - ucacuggguugaguuugucu - 72
• Evidence: experimental; SOLID [1]
• Database links:
  • RNAcentral:URS000033B5F0_7070

References

1. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).