Stem-loop tca-mir-980

Accession

MI0016380

Description

Tribolium castaneum tca-mir-980 precursor miRNA

Gene family

MIPF0000890; mir-980

Sequence

uugacaacugggugccgcaGGGCUCGUCAUGGGGUAGCuagcgugugauuaacagcCAGCUGCCUUUUGAAGGGCUAUauggcauugguuuuuua
.....(((..(((((((...(((((.(((.(((((((((.((.(((.....))))).))))))))).))).)))))...))))))).))).....

Structure

uugac   ug       caG     G   U         a  g   g 
     aac  ggugccg   GGCUC UCA GGGGUAGCu gc ugu a
     |||  |||||||   ||||| ||| ||||||||| || ||| u
     uug  uuacggu   UCGGG AGU UUCCGUCGA cg aca u
auuuu   -g       aUA     A   U         C  -   a 

Annotation confidence Not enough data

Genome context

Unmapped977: 1409-1503 [+]

Mature tca-miR-980-5p

• Accession: MIMAT0018864
• Description: Tribolium castaneum tca-miR-980-5p mature miRNA
• Sequence: 20 - GGGCUCGUCAUGGGGUAGC - 38
• Evidence: experimental ; SOLID [1]

Mature tca-miR-980-3p

• Accession: MIMAT0018865
• Description: Tribolium castaneum tca-miR-980-3p mature miRNA
• Sequence: 57 - CAGCUGCCUUUUGAAGGGCUAU - 78
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696